An alias provided for backward compatibility with mizer version <= 1.0
getZ( params, n = params@initial_n, n_pp = params@initial_n_pp, n_other = params@initial_n_other, effort = params@initial_effort, m2 = getPredMort(params, n = n, n_pp = n_pp, n_other = n_other), starv_mort = getStarvMort(params, n = n, n_pp = n_pp, n_other = n_other) )
| params | A MizerParams object |
|---|---|
| n | A matrix of species abundances (species x size). |
| n_pp | A vector of the plankton abundance by size |
| n_other | A list of abundances for other dynamical components of the ecosystem |
| effort | A numeric vector of the effort by gear or a single numeric effort value which is used for all gears. |
| m2 | A two dimensional array of predation mortality (optional). Has
dimensions no. sp x no. size bins in the community. If not supplied is
calculated using the |
A two dimensional array (prey species x prey size).
Other rate functions:
getEGrowth(),
getEReproAndGrowth(),
getERepro(),
getEncounter(),
getFMortGear(),
getFMort(),
getFeedingLevel(),
getPlanktonMort(),
getPredMort(),
getPredRate(),
getRDD(),
getRDI(),
getRates(),
getStarvMort()
if (FALSE) { data(NS_species_params_gears) data(inter) params <- newMultispeciesParams(NS_species_params_gears, inter) # Project with constant fishing effort for all gears for 20 time steps sim <- project(params, t_max = 20, effort = 0.5) # Get the total mortality at a particular time step getMort(params,sim@n[21,,],sim@n_pp[21,],effort=0.5) }