Get all rates

Calls all the other rate functions in sequence and collects the results in a list.

getRates(
  params,
  n = params@initial_n,
  n_pp = params@initial_n_pp,
  n_other = params@initial_n_other,
  t = 0,
  effort = params@initial_effort,
  sex_ratio = 0.5
)

Arguments

params	A MizerParams object
n	A matrix of species abundances (species x size).
n_pp	A vector of the plankton abundance by size
n_other	A list of abundances for other dynamical components of the ecosystem
t	The current time
effort	The effort for each fishing gear.
sex_ratio	Proportion of the population that is female. Default value is 0.5.

Value

A list with the following components:

• encounter from getEncounter

• feeding_level from getFeedingLevel

• pred_rate from getPredRate

• pred_mort from getPredMort

• mort from getMort

• plankton_mort from getPlanktonMort

• e from getEReproAndGrowth

• e_repro from getERepro

• e_growth from getEGrowth

• rdi from getRDI

• rdd from getRDD

See also

Other rate functions: getEGrowth(), getEReproAndGrowth(), getERepro(), getEncounter(), getFMortGear(), getFMort(), getFeedingLevel(), getMort(), getPlanktonMort(), getPredMort(), getPredRate(), getRDD(), getRDI(), getStarvMort()