An alias provided for backward compatibility with mizer version <= 1.0
getM2Background( params, n = params@initial_n, n_pp = params@initial_n_pp, n_other = params@initial_n_other, pred_rate = getPredRate(params, n = n, n_pp = n_pp, n_other = n_other) )
| params | A MizerParams object |
|---|---|
| n | A matrix of species abundances (species x size). |
| n_pp | A vector of the plankton abundance by size |
| n_other | A list of abundances for other dynamical components of the ecosystem |
| pred_rate | An array of predation rates of dimension no. sp x no.
community size bins x no. of size bins in whole spectra (i.e. community +
plankton, the w_full slot). The array is optional. If it is not provided
it is calculated by the |
A vector of mortality rate by plankton size.
Used by the project function for running size based simulations.
Other rate functions:
getEGrowth(),
getEReproAndGrowth(),
getERepro(),
getEncounter(),
getFMortGear(),
getFMort(),
getFeedingLevel(),
getMort(),
getPredMort(),
getPredRate(),
getRDD(),
getRDI(),
getRates(),
getStarvMort()
if (FALSE) { data(NS_species_params_gears) data(inter) params <- newMultispeciesParams(NS_species_params_gears, inter) # With constant fishing effort for all gears for 20 time steps sim <- project(params, t_max = 20, effort = 0.5) # Get plankton mortality at one time step n <- sim@n[21,,] n_pp <- sim@n_pp[21,] getPlanktonMort(params,n,n_pp) }