Package index • mizerSeasonal

Setting up seasonal effects

setSeasonalReproduction(): Set seasonal reproduction

Gonad release functions

Functions for specifying the time-dependence of the gonad release rates

seasonalBetaHazardRelease(): Beta hazard mass-specific gonad release rate
seasonalBetaRelease(): Beta distributed gonad release rate
seasonalGaussianRelease(): Gaussian mass-specific gonad release rate
seasonalVonMisesRelease(): von-Mises distributed gonad release rate

Reproduction rate functions

Functions for specifying the rate of offspring production after taking extra non-linear effects into account

seasonalBevertonHoltRDD(): Beverton Holt function to calculate density-dependent reproduction rate
seasonalVonMisesRDD(): von-Mises distributed reproduction rate independent of abundance

Seasonal resource dynamics

seasonal_resource_semichemostat(): Seasonal semichemostat resource dynamics

Plotting functions

plotGonadsVsTime(): Plot per-capita gonadic mass through time at a given size
plotRDD(): Plot density-dependent reproduction rate over time
plotRDI(): Plot density-independent reproduction rate over time
animateGonadSpectra(): Animation of the gonadic mass spectra

Helper functions

Functions that you will not need to call directly.

projectRDI(<mizerSeasonal>): Seasonal density-independent reproduction rate via S3 dispatch
projectEncounter(<mizerSeasonal>): Seasonal encounter rate including gonadic mass of prey via S3 dispatch
gonadDynamics(): Update the gonadic mass using a seasonal reproduction rate
getTimeseries(): Get time series of summary functions from simulation

Example parameters

datta_params: Parameters used by Datta & Blanchard (2016)