Plot density-independent reproduction rate over time

Usage

plotRDI(
  sim,
  sim2,
  species = NULL,
  total = FALSE,
  log = FALSE,
  highlight = NULL,
  return_data = FALSE,
  ...
)

sim: An object of class MizerSim
sim2: An optional second object of class MizerSim. If this is provided its RDIs will be shown on the same plot in bolder lines.
species: The species to be selected. Optional. By default all target species are selected. A vector of species names, or a numeric vector with the species indices, or a logical vector indicating for each species whether it is to be selected (TRUE) or not.
total: A boolean value that determines whether the total over all species in the system is plotted as well. Note that even if the plot only shows a selection of species, the total is including all species. Default is FALSE.
log: Boolean whether RDI should be plotted on a logarithmic axis. Defaults to true.
highlight: Name or vector of names of the species to be highlighted.
return_data: A boolean value that determines whether the formatted data used for the plot is returned instead of the plot itself. Default value is FALSE
...: Other arguments (currently unused)

A ggplot2 object, unless return_data = TRUE, in which case a data frame with the three variables 'Year', 'RDI', 'Species' is returned.